Learning the mechanism of collective microbial function via random community-media pairing.
Learning the mechanism of collective microbial function via random community-media pairing. Phys Biol. 2026 Oct 13.
PMID: 42869071
Bacterial vitamin sharing emerges from a balance between release and uptake.
Bacterial vitamin sharing emerges from a balance between release and uptake. bioRxiv. 2026 Oct 13.
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The ecological context of enzymatic variation.
The ecological context of enzymatic variation. bioRxiv. 2026 Sep 10.
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Hierarchical control of bacterial growth efficiency by substrate and taxonomy.
Hierarchical control of bacterial growth efficiency by substrate and taxonomy. bioRxiv. 2026 Jul 29.
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Epistatic interactions inform rational design of synthetic microbial communities for bioremediation.
Epistatic interactions inform rational design of synthetic microbial communities for bioremediation. Nat Microbiol. 2026 Jul; 11(7):1995-2007.
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Phylogenetic coherence in microbiome composition across environmental gradients.
Phylogenetic coherence in microbiome composition across environmental gradients. bioRxiv. 2026 Jun 10.
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Global epistasis in ecosystems arises from resource constraints.
Global epistasis in ecosystems arises from resource constraints. bioRxiv. 2026 May 15.
PMID: 42182413
Learning functional groups in complex microbiomes.
Learning functional groups in complex microbiomes. ArXiv. 2026 Mar 03.
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Learning functional groups in complex microbiomes.
Learning functional groups in complex microbiomes. bioRxiv. 2026 Mar 03.
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Statistical design of a synthetic microbiome that suppresses diverse gut pathogens.
Statistical design of a synthetic microbiome that suppresses diverse gut pathogens. bioRxiv. 2025 Dec 31.
PMID: 41502951