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Seppe Kuehn, PhD

Hierarchical control of bacterial growth efficiency by substrate and taxonomy.
Hierarchical control of bacterial growth efficiency by substrate and taxonomy. bioRxiv. 2026 Jul 29.
PMID: 42619735

Epistatic interactions inform rational design of synthetic microbial communities for bioremediation.
Epistatic interactions inform rational design of synthetic microbial communities for bioremediation. Nat Microbiol. 2026 Jul; 11(7):1995-2007.
PMID: 42373819

Phylogenetic coherence in microbiome composition across environmental gradients.
Phylogenetic coherence in microbiome composition across environmental gradients. bioRxiv. 2026 Jun 10.
PMID: 42327301

Global epistasis in ecosystems arises from resource constraints.
Global epistasis in ecosystems arises from resource constraints. bioRxiv. 2026 May 15.
PMID: 42182413

Learning functional groups in complex microbiomes.
Learning functional groups in complex microbiomes. ArXiv. 2026 Mar 03.
PMID: 41822155

Learning functional groups in complex microbiomes.
Learning functional groups in complex microbiomes. bioRxiv. 2026 Mar 03.
PMID: 41867766

Statistical design of a synthetic microbiome that suppresses diverse gut pathogens.
Statistical design of a synthetic microbiome that suppresses diverse gut pathogens. bioRxiv. 2025 Dec 31.
PMID: 41502951

Learning the mechanism of collective microbial function via random community-media pairing.
Learning the mechanism of collective microbial function via random community-media pairing. bioRxiv. 2025 Nov 27.
PMID: 41394740

Functional regimes define soil microbiome response to environmental change.
Functional regimes define soil microbiome response to environmental change. Nature. 2025 08; 644(8078):1028-1038.
PMID: 40670792

Inferring Resource Competition in Microbial Communities from Time Series.
Inferring Resource Competition in Microbial Communities from Time Series. PRX Life. 2025 Apr-Jun; 3(2).
PMID: 42052147

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